Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPFRNIGIIGRLGSTQVLDTIRRLKKFLIDRHLHVILEDTIAEVLPGHGLQTCSRKIMGEICDLVVVVGGDGSMLGAARALARHKVPVLGINRGSLGFLTDIRPDELEAKVGEVLDGQYIVESRFLLDAQVRRGIDSMGQGDALNDVVLHPGKSTRMIEFELYIDGQFVCSQKADGLIVATPTGSTAYALSAGGPIMHPKLDAIVIVPMYPHMLSSRPIVVDGNSELKIVVSPNMQIYPQVSCDGQNHFTCAPGDTVTISKKPQKLRLIHPIDHNYYEICRTKLGWGSRLGGGD
1YT5 Chain:D ((42-256))
--------------------------------------------------------------ADLIVVVGGDGTVLKAAKKAA-DGTPMVGFKAGRLGFLTSYTLDEIDRFLEDLRNWNFREETRWFIQIE-----SELGNHLALNDVTLERDLSGKMVEIEVEVEHHSSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSVVIPSN--FKVVVESQRDI--NMLVDG---VLTGKTKRIEVKKSRRYVRILRPPEYDYVTVIRDKLGYGRR-----
General information:
TITO was launched using:
RESULT:
Template:
1YT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131774 for 1734 contacts (-76.0/contact) +
2D Compatibility (PS) -24204 + (NN) -12867 + (LL) 5032
1D Compatibility (HY) -20000 + (ID) 3800
Total energy: -187613.0 ( -108.20 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_1YT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YT5-query.scw
PDB file :
Tito_Scwrl_1YT5.pdb
: