Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQKIVRVGDIQIGNDLPFVLFGGMNVLESRDLAMQVCEEYVRVTEKLGIPYVFKASFDKANRSSIHSFRGPGLEEGMKIFEEIKKTFKVPVITDVHEPFQAQPVAEVCDIIQLPAFLSRQTDLVVAMARTNAVINIKKAQFLAPQEMKHILTKCEEAGNDRLILCERGSSFGYNNLVVDMLGFGIMKQF--EYPVFFDVTHALQMPGGRADSAGGRRAQVTDLAKAGLSQKLAGLFLEAHPDPEHAKCDGPCALRLNKLEAFLSQLKQLDELIKSFPAIETA
1D9E Chain:B ((1-283))
MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQ------------RAQVAELARAGMAVGLAGLFIEAHPDPE------PSALPLAKLEPFLKQMKAIDDLVKGFEELDTS
General information:
TITO was launched using:
RESULT:
Template:
1D9E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188477 for 2211 contacts (-85.2/contact) +
2D Compatibility (PS) -28871 + (NN) -16906 + (LL) -176
1D Compatibility (HY) -37200 + (ID) 9300
Total energy: -280930.0 ( -127.06 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_1D9E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D9E-query.scw
PDB file :
Tito_Scwrl_1D9E.pdb
: