Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSNRYPLPAQTGLVVAPGLPPKNSTLRPDQL-NKRLSSAWHHLYDLCPELLKIDPPDGLTILRGFLQWAAEQKAA---WNWAMHLRLYCWLLQSPFGAKVTDEHLEVLMDASAARWTVDDTSANRGILLASQGGAHITQDWKAPQAGAGTRVPLERLDLPAPNWTFAYCAVPDPRLREFPGWKPLPARGSLVG
4ZC4 Chain:A ((12-158))
-QHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLR--DHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEA----------------------------------GQLYGLEKF-WAFLKYSKAKNLDIDPKLQEYLGKFR---------
General information:
TITO was launched using:
RESULT:
Template:
4ZC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39711 for 1026 contacts (-38.7/contact) +
2D Compatibility (PS) -15347 + (NN) -6368 + (LL) 2296
1D Compatibility (HY) -5600 + (ID) 1250
Total energy: -65980.0 ( -64.31 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_4ZC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZC4-query.scw
PDB file :
Tito_Scwrl_4ZC4.pdb
: