Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------MKAYDIEIVNDAAHAGEANHGWCFGLPPGIRPEQWP--------LDPDTGYPLMHGFTLLLPEDYRVHGPEIVALSFFSLAPDQNDGGPTSVD-------GIREMLIDPPAQPPAEAELRPF------------------------WEAGRNSHPRLHRMEDILGGAYALILLDAAEFSGAPCQP------RALPAG--NPLLAQTEPPQWLE--AGSAASFVPDWAE---DDYYLLRALGGRPAA-GHQQRYPLRWTARAQDPN-----AGVVPSEYGDGGYQLPHYWLDGKIERDNYR-EHPWVEGHLPNHIGGTMRPVQGVPEMSPFYVEFE-EYLGGYNFGGGNAQLDFRDMRFDWACG------------ |
| 4K5Y Chain:A ((13-423)) | HYHVAAIINYLGHCISLVALLVAFVLFLRARSIRCLRNIIHANLIAAFILRNATWFVVQLTMSPEVHQSNVGWCRLVTAAYNYFHVTNFFWMFGEGCYLHTAIVLTNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLSVAKSELDKAIGRNSNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRSALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVIATFRTGTWDAYDRLRAWMFICIGWGVPFPIIVAWAIGKLYYDNEKCWAGKRPGVYTDYIYQGPMALVLLINFIFLFNIVRILMTKLRASTTSETIQARKAVKATLVLLPLLGITYMLAFVNEVSRVVFIYFNAFLESFQGFFVSVFACFLNS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -18744 for 1942 contacts (-9.7/contact) +
2D Compatibility (PS) -30812 + (NN) 8999 + (LL) 0
1D Compatibility (HY) -9600 + (ID) 2450
Total energy: -52607.0 ( -27.09 by residue)
QMean score : -0.027
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