Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLLDIKNLSVRFGDTTAVPVVDGLDLSVDKGEVLAIVGESGSGKSVTMMALMGLIDAPGWVSADHLRFDGHDMLTLKGRQRRRIVGKDMAMVFQDPMTALNPSYTVGYQIEEV----LRLHLGLRGKALRQRALELLERVEIPAAASRLDAYPHQLSGGMSQRVAIAMAIAAEPKLLIADEPTTALDVTIQAQIMELLLNLQRDQDMALILITHDLAVVAETAQRVCVMYAGEAVEIGGVPALFDRPTHPYTEALIKAIPEHCAGEARLATLPGIVPGRYDRPRGCLLSPRCPYAQEHCRQERPALETHERGAVRCFYPLNLLNEVA |
4U02 Chain:B ((4-243)) | --IIRIRNLHKWFG---PLHVLKGIHLEVAPGEKLVIIGPSGSGKSTLIRTINRLED----FQEGEVVVDG---LSVKDDRALREIRREVGMVFQQ--FNLFPHMTV---LENVTLAPMRVRRWPREKA-EKKALELLERVGILDQARK---YPAQLSGGQQQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLDVMRDLAQG-GMTMVVVTHEMGFAREVADRVVFMDGGQIVEEGRPEEIFTRPKEERTRSFLQRVLH------------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4U02.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -210876 for 1955 contacts (-107.9/contact) +
2D Compatibility (PS) -25904 + (NN) -9802 + (LL) 4800
1D Compatibility (HY) -21200 + (ID) 4650
Total energy: -267632.0 ( -136.90 by residue)
QMean score : 0.507
|
|
|