Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLEKLFQLKAHNTTVRTEILAGITTFLTMAYILFVNPSILGETGMDKGAVFVATCLAAAIGSTIMGLIANYPIALAPGMGLNAFFTYTVVLHMGHSWQVALGAVFISATMFFLLSIFRIREWIINSIPLPLRSAIAAGIGLFLALIALQNAGIVVDNPATLIGMGDLTKPAPILATLGFILIVALEARSVTGAVLIGILVVTAIAILLGVTQFGGVVSMPPSLAPTFLQLDIKGALDIGLVSVIFAFLFVDLFDNSGTLIGVAKRAGLMGKDGHMPKMGRALIADSTAAMGGSLLGTSTTTSYIESAAGVSAGGRTGLTAIVVAILFLLALFFAPLAGSVPAFATAPALLFVAVLMASGLAEIDWEDITVAAPVVVTALAMPFTYSIATGIAFGFISWTAIKVLSGRWRELNPALVILSVLFVIK------LGFFNA----- |
4V12 Chain:A ((7-343)) | DTSTLESRVGHYYQMEDTYLVGREKVREFARAV-----------QDYHPAHWNLATAADLGHP--GLIAPLTFTSAPAMACNQRMFESVVVGYD--------------------MYLQTEEVFEQHRPIVEGDELSIDIELTSVRRIAGRDLITVTNTFT-------DTAGEVVHTL-HTTVVGITAEDVDPA----IRPAVQGVMMHGINMLGVEETNAPYEKTVRPEGELRIA-QGGATRTPTSLNFDDL------------------KVGEELPVHTARLSRGDLVNYAGVAGDANPLHWDENIAKLA--GQPDVIAHGMLTMGLGAGFVSSWSGDPGA--------------------ITRYAVRLSQPAVVPAEGTEIEYS-------------------GRIKSLDPETRTGVVIVAAKSGGRKIFGLATATIRFS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4V12.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -302962 for 2640 contacts (-114.8/contact) +
2D Compatibility (PS) -33632 + (NN) 4350 + (LL) 8460
1D Compatibility (HY) 0 + (ID) 3500
Total energy: -327284.0 ( -123.97 by residue)
QMean score : 0.133
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