Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
3UDV Chain:A ((4-157))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGR----ERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
3UDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110025 for 1121 contacts (-98.1/contact) +
2D Compatibility (PS) -15986 + (NN) -9737 + (LL) 1224
1D Compatibility (HY) -16800 + (ID) 3850
Total energy: -155174.0 ( -138.42 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_3UDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDV-query.scw
PDB file :
Tito_Scwrl_3UDV.pdb
: