Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRDTLHDLHRPLGDTGLAVSPLGLGTVKFGRDQGVKYPSGFTIPDDREAADLLALARDLGINLIDTAPAYGRSEERLGPLLRGQREHWVIVSKVGEEFVDGQSVFDFSAAHTRRSVERSLKRLETDRIELVLVHSDGNDLDILENSEVYPTLAALKREGLIGAYGLSGKTVEGGLRALREGDCAMVTYNLNERAERPVIEYAAAHAKGILVKKALASGHACLGAGQDPVRASFELVFDQPGVAAAIVGTINPLHLAHNVAMAAQALKKA
4EXA Chain:D ((23-290))
MIRDTLHDLHRPLGDTGLAVSPLGLGTVKFGRD---------TIPDDREAADLLALARDLGINLIDTAPAYGRSEERLGPLLRGQREHWVIVSKVGEEFVDGQSVFDFSAAHTRRSVERSLKRLETDRIELVLVHSDGNDLDILENSEVYPTLAALKREGLIGAYGLSGKTVEGGLRALREGDCAMVTYNLNERAERPVIEYAAAHAKGILVKKALAS-------GQDPVRASFELVFDQPGVAAAIVGTINPLHLAHNVAMAAQALK--
General information:
TITO was launched using:
RESULT:
Template:
4EXA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163951 for 2221 contacts (-73.8/contact) +
2D Compatibility (PS) -27402 + (NN) -12542 + (LL) 516
1D Compatibility (HY) -32400 + (ID) 12600
Total energy: -248379.0 ( -111.83 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_4EXA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EXA-query.scw
PDB file :
Tito_Scwrl_4EXA.pdb
: