Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAF---EGKPVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAKDGFVATDGWAEVSEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGIHNLGDIQKLLDARTPGIIGAITGRAIYEGTLDVAEAQALCDNFKA
4X9S Chain:A ((11-240))
--LLPAVDVRDGQAVRLVHGVSGSETSYGS-PLEAALAWQASGAEWLHLVDLDAAFGTGDNRALVAEITGAM-----DIKVELSGGIRDDASLAAALATGCTRVNLGTAALETPEWAAKAIAEHGDRIAVGLDVRGTTLKGRGWTSEGGDLYETLAR-LDSEGCARYVVTDIGKDGTLTGPNLELLKNVCAATDRPVVASGGISSLEDLRALAALVPQGVEGAIVGKALYAKAFTLEEA---------
General information:
TITO was launched using:
RESULT:
Template:
4X9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164440 for 1974 contacts (-83.3/contact) +
2D Compatibility (PS) -24573 + (NN) -9469 + (LL) 1384
1D Compatibility (HY) -14000 + (ID) 3900
Total energy: -214998.0 ( -108.91 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_4X9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4X9S-query.scw
PDB file :
Tito_Scwrl_4X9S.pdb
: