Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIG------EEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAA--AGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN--RGIVVDRSLRTSHANIYALGDCAEVDGL------NLLYVMPLMACARALAQTLAGNPSQV-AYGPMPVTVKTPACPLVVSPPPRGMDGQW-------LV---------EGSGTDLKVLCRD-TAGRVIGYALTGA-AVNEKLALNKELPGLMA |
| 1NHP Chain:A ((1-405)) | ----MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDG-RVQKVVTDKNAYDADLVVVAVGVRPNTAWLKG-TLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDY-KFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAIS------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NHP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -262557 for 3115 contacts (-84.3/contact) +
2D Compatibility (PS) -40404 + (NN) -16915 + (LL) 1184
1D Compatibility (HY) -17200 + (ID) 3250
Total energy: -339142.0 ( -108.87 by residue)
QMean score : 0.372
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