Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKPVCLVVAMTPKRGIGINNGLPWPHLTTDFKHFSRVTKTTPEEASRLNGWLPRKFAKTGDSGLPSPSVGKRFNAVVMGRKTWESMPRKFRPLVDRLNIVVSSSLKEEDIAAEKPQ-----AEGQQRVRVCASLPAALSLLEEE-YKDSVDQIFVVGGAGLYEAALSLGVA---SHLYITRVA-REFPCDVFFPAFPGDDILSNKSTAAQAAAPAESVFVPFCPELGREKDNEATYRPIFISKTF--SDNGVPYDFVVLEK
3RG9 Chain:A ((28-238))
---PFSVVVASDEKGGIGDGGTIPW-EIPEDMQYFRRVTTNLRGKNV--------------------KPSPSKRNAVVMGRKTWDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQAIHRTVVRPASNSCSVFFDIPAAGT----------KTPEGL-ELVRESITD----------------ERVSTGAGGKKYQFEKLVP
General information:
TITO was launched using:
RESULT:
Template:
3RG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126251 for 1503 contacts (-84.0/contact) +
2D Compatibility (PS) -22345 + (NN) -13145 + (LL) 2128
1D Compatibility (HY) -11600 + (ID) 3250
Total energy: -174463.0 ( -116.08 by residue)
QMean score : 0.299
(partial model without unconserved sides chains):
PDB file :
Tito_3RG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RG9-query.scw
PDB file :
Tito_Scwrl_3RG9.pdb
: