Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMCFLLIISSILVVFAFVLGNVANGFIALVNVIDWVNTRKISSAEQILTALVVSRIGLLWVMLFLWYATV-FNSALYGLEV-RIVASNAWAVTNHFSMWLAASLSIFCLLKIANFSNLI-SLHLKKRIKSVVLVILLGPLVFLI---CNLAVITMDERVWTKE-YEGNVTWKIKLRNAIHLSSLTVTTLANLIPFTLSLICFLLLICSLCKHLKKMR--LHSKG-SQDPSTKVHIKALQTVTSFLMLFAIYFLCIITSTWNLRTQQSKLVLLLCQTVAIMYPSFHSFILIMGSRKL-KQTFLSVLWQMTR |
3SPE Chain:A ((7-286)) | -ANPSRLIVAIEIVEDEIPLTKVDGLKARIILIED-NTSEVGTQRVLPGTLVSDKDGSQSLVYPLFEAPVSFFGKLGDSNGMRVWSTTT--------------------ADIEEFDEAAMAKFKTRQFRIQLIEKPESPVIVKTADQQDYLNITFDKGVYS-DMYNADLYVGDVLVDSYSDDGVVSGLSPLYSPFSQFYV--------YHENIDLVRQMIYDTEMRVNPAAAAHTTAPGE---------IDFLTFLAVDGDP------------------YQGIQVLGPLDGGITLGKDGNIYASGGTDG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SPE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -235750 for 1854 contacts (-127.2/contact) +
2D Compatibility (PS) -25051 + (NN) 10141 + (LL) 7024
1D Compatibility (HY) -800 + (ID) 1950
Total energy: -246386.0 ( -132.89 by residue)
QMean score : 0.125
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