Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLSAGLGLLMLVAVVEFLIGLIGNGSLVVWSFREWIRKFNWSSYNLIILGLAGCRFLLQWLIILDLSLFP---LFQSSRWLRYLSIFWVLVSQASLWFATFLSVFYCKKITTFDRPAYLWLKQRAYNLSLWCLLGYFIINLLLTVQIGLTFY--HPP--QGNSSIRYPFES-W---QYLYAFQLNSGSYLPLVVFLVSSGMLIVSLYTHHKKMKVHSAG------------------------------------------------------------------------------------------------------------------------------------------------------RRDVRAKAHITALKSLGCFLLLHLVYIMASPFSITSKTYP-----------P-D-LTSVFIWETLMAAYPSLHSLILIMGIPRVKQTCQKILWKTVCARRCWGP |
| 3ODU Chain:A ((47-499)) | ----NKIFLPTIYSIIFLTGIVGNGLVILVMGYQ---KKLRSMTDKYRLHLSVADLLFVITL-PFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATN-SQRPRKL---LAEKV----VYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -180287 for 1963 contacts (-91.8/contact) +
2D Compatibility (PS) -28544 + (NN) -6698 + (LL) 1652
1D Compatibility (HY) -12400 + (ID) 1950
Total energy: -228227.0 ( -116.26 by residue)
QMean score : 0.187
|
|
|