Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGDKLLSELGYKLGRTIGEGSYSKVKVATSKKYKGTVAIKVVDRRRAPPDFVNKFLPRELSILRGVRHPHIVHVFEFIEVCNGKLYIVME-AAATDLLQAVQRNGRIPGVQARDLFAQIAGAVRYLHDHHLVHRDLKCENVLLSPDERRVKLTDFGFGR--QAHGYPDLSTTYCGSAAYASPEVLLGIPYDPKKYDVWSMGVVLYVMVTGCMPFDDSDIAGLPRRQ-KRGVLYPEGLELSERCKALIAELLQFSPSARPSAGQVARNCWLRAGDSG
4CZT Chain:D ((13-271))
-----------YELGRTLGEGTFAKVKFARNVENGDNVAIKVIDKEKVLKNKMIAQIKREISTMKLIKHPNVIRMFEVM-ASKTKIYFVLEFVTGGELFDKISSNGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDAN-GALKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLTSLYKKIFKAEFTCPPWFSAS--AKKLIKRILDPNPATRITFAEVIENEWFKKGYKA
General information:
TITO was launched using:
RESULT:
Template:
4CZT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137083 for 1979 contacts (-69.3/contact) +
2D Compatibility (PS) -27706 + (NN) -11880 + (LL) 840
1D Compatibility (HY) -23600 + (ID) 4600
Total energy: -204029.0 ( -103.10 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_4CZT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CZT-query.scw
PDB file :
Tito_Scwrl_4CZT.pdb
: