Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKSQLVKKVFDSVAYRYDIMNDIISLGIHRLWKDKMVNSVHFTK--NSQV----LDVAGGTGDIAIRIVRREPS------VQVTVCDINQNMLSRGRNKAINSNQL----NFNWVCANAESLPFEDSEF-DCCTIAFGIRNVSDRKKALSEIHRVLKPNGQFICLEFAPMHYKNEIFTKLYDLYSLKVIPKIGNIVTKDESPYQYLVRSIREFPVQTDFKMEIEEVGFKKVKFHNMSYGIVALHTGTK
4OBW Chain:B ((26-256))
---------------NRYDLMNDVMSLGIHRLWKDHFINKLDAGKRPNSTTPLNFIDVAGGSGDIAFGLLDHAESKFGDTESTMDIVDINPDMLKEGEKRAMEQGKYFKDPRVRFLVSNGEKLEEIDSDSKDIYTVSFGIRNFTDIQKGLNTAYRVLKPGGIFYCLEFSKI--ENPLMDFAYQQWA-KVLPVMGSMIANDYDSYQYLVESIERFPDQETFKSMIEKAGFKSAGYESLTFGICAIHWGIK
General information:
TITO was launched using:
RESULT:
Template:
4OBW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120378 for 1677 contacts (-71.8/contact) +
2D Compatibility (PS) -23168 + (NN) -1804 + (LL) 1648
1D Compatibility (HY) -22800 + (ID) 4650
Total energy: -171152.0 ( -102.06 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_4OBW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OBW-query.scw
PDB file :
Tito_Scwrl_4OBW.pdb
: