Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGQHFIVTGGTSGLGLSIVRKLLENKVHVTLLVRDVDKATRIFEQELGKTINVIPCDLNDLKSIQALQFEDNTSFDGFIYSAGLGYFKSISDHSFSEMIETYQLNLISFNVLYTVLRPYLTS---NAHIVGISSQAAFSTQANAAHYGASKAGFYALMNALRLES-P-NLHIMTVNVGPIDTPFHQKA-D-P-SM--KYAKKMGEIMLDANQLAEDIIYGIKTKQLEINRPKWMHHALKMYQIAPRFFERCFPKLFKNKA
3D3W Chain:A ((6-234))
-AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC--PGIEPVCVDLGDWEATERALG-SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDR-SGMTTGST---------------------------
General information:
TITO was launched using:
RESULT:
Template:
3D3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146080 for 1830 contacts (-79.8/contact) +
2D Compatibility (PS) -24029 + (NN) -13238 + (LL) 2924
1D Compatibility (HY) -9200 + (ID) 1850
Total energy: -191473.0 ( -104.63 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_3D3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D3W-query.scw
PDB file :
Tito_Scwrl_3D3W.pdb
: