Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSKKLYLALIIGVLLAFLTLSSWLGNSGLVGRFGVWFAAINKKYFGYLSLINLPYLAWVLFLLYRAKNPFTEIVLEKTLGHLLGILSLLFLQSSLLNQGEIGNSARLFLHPFIGDFGLYVLIMLMVVISYLILFKLPPKSVFYPYMNKTQSLLKEIYKQCLQAFSPNFSLKKEGFENTPSDSQKKETNNDKEKENLKENPIDENHNTPNEESFLAIPTPYNTTLNNSEPQEGLVQISPHPPTHYTIYPKRNRFDDLTNPTLKEPKQETKEREPTLKKETPTTLKPIMPISASNTENHDKTENHKTPNHPIKEDDLQESPQENPQKENIEENIEEKETQNAPSFSPLTLTSAKKPVMVKELSENKEILDGLDYGEVQKPKDYELPTTQLLNAVCLKETSLDENEIDQKIQDLLSKLRTFKIDGDIIRTYSGPIVTTFEFRPAPSVKVSRILGLSDDLAMTLCAESIRIQAPIKGKDVVGIEIPNSQSQIIYLREILESELFQKSSSPLTLALGKDIVGNPFITDLKKLPHLLIAGTTGSGKSVGVNAMILSLLYKNPPDQLKLVMIDPKMVEFSIYADIPHLLTPIITDPKKAIGALQSVAKEMERRYSLMSEYKVKTIDSYNEQAQSNGVEAFPYLIVVIDELADLMMTGGKEAEFPIARIAQMGRASGLHLIVATQRPSVDVVTGLIKTNLPSRVSFRVGTKIDSKVILDTDGAQSLLGRGDMLFTPPGTNGLVRLHAPFATEDEIKKIVDFIKAQKEVEYDKDFLLEESRMPLDTPNYQGDDILERAKAVILEKKITSTSFLQRQLKIGYNQAATITDELEAQGFLSPRNAKGNREILQNF |
2VE9 Chain:B ((9-66)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VE9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -20739 for 373 contacts (-55.6/contact) +
2D Compatibility (PS) -6236 + (NN) -1907 + (LL) 49552
1D Compatibility (HY) -4400 + (ID) 1100
Total energy: 15170.0 ( 40.67 by residue)
QMean score : 0.714
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