Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYDYDEPLYLISVVAKILGVHPQTSRQYEKEGLIEPS-RTDGKMRLYSQRDMDKIKTILRLTRDMGVNLA--------------GVDIILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNLNTPTNFYELILFKK
1Q06 Chain:B ((3-99))
----------ISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNEL-TLLRQARQVGFNLEESGELVNLFNDPQHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACPGDDSADCPIIENLS---
General information:
TITO was launched using:
RESULT:
Template:
1Q06.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10840 for 441 contacts (-24.6/contact) +
2D Compatibility (PS) -8593 + (NN) -2658 + (LL) 956
1D Compatibility (HY) -4400 + (ID) 1600
Total energy: -27135.0 ( -61.53 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_1Q06.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q06-query.scw
PDB file :
Tito_Scwrl_1Q06.pdb
: