Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADTINTTETTHETKKPNAFVNFFKNNLTDKRYDSLGLIGAGVLCCVLSGAM--GIVGIIFVAIGIFLSFSNINLVKLVEKLSKKQ------PKAATTVNNETQKSQAASVTNEPTEAKETKD--------
1PA7 Chain:A ((1-130))
MAVNVYSTSVTSDNLSRHDMLAWINESL-QLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAAR
General information:
TITO was launched using:
RESULT:
Template:
1PA7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33517 for 792 contacts (-42.3/contact) +
2D Compatibility (PS) -11265 + (NN) 242 + (LL) 52
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -49638.0 ( -62.67 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_1PA7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PA7-query.scw
PDB file :
Tito_Scwrl_1PA7.pdb
: