Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYSYEAFLKDSLELAKQVERLCGIPEALVCVMRGGMTLVHFLSLHWNLREVYGINAISYDTTKRQNALKIENTPTIK----DHL--KTILVVDEIVDSGNSLEAVLKVLQDKHPDKKFYSASLFQKTSAKYKADAFLKDAPEWIDFFWEVDLKNLKSH
5BQO Chain:F ((29-148))
------------------------IPDVLIAVLTGGIIPAKLLSDLLDLKVIRYIDIKF-------------SKPVIRSVYTDSLEGKKVLVVDDVADTGETLEAVSNVITMFNP-AKVMTAALYLKPWSKRIPDFYYKQIDKWIIFPWDKWDVVRENS
General information:
TITO was launched using:
RESULT:
Template:
5BQO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70334 for 776 contacts (-90.6/contact) +
2D Compatibility (PS) -11445 + (NN) -3229 + (LL) 3104
1D Compatibility (HY) -9200 + (ID) 1900
Total energy: -93004.0 ( -119.85 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_5BQO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BQO-query.scw
PDB file :
Tito_Scwrl_5BQO.pdb
: