Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKASIYDFTLDELSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRD------------LKASEIIQQALLIKEANNLPIEKALN------IVFMGMGEPL--NNLDEVCKAVEIFNTGMQISPKRITISTSGVADKIPILAGKNLGV-QLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLREKKLQQKI------- |
2YX0 Chain:A ((11-342)) | -----------------KITVQANPN---MPKEVAELFRKQHYEIVGRHSGVKLCHWLKKSLTE-------------------GRFCYKQKFYG-------------IHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKPKVDKKKFEEAWNPTHAAISLSGEPMLYPYMGDLVEEFHKRG------FTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMR-DLPTRTVVRLTLVKGENM--HSPEKYAKLILKARPMFVEAKAYMNRLTINNMPSHQDIREFAEALVKHLPGYHIEDEYEPSRVVLIMRDDVDPQGTGVEGRFIKH |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YX0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96358 for 2405 contacts (-40.1/contact) +
2D Compatibility (PS) -30593 + (NN) -4160 + (LL) 5028
1D Compatibility (HY) -4400 + (ID) 2000
Total energy: -132483.0 ( -55.09 by residue)
QMean score : 0.275
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