Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYPFNHKEFVAMMEQYNLKSNSITIPEHTILNDLVTENRDCVYLLKSGILAGYIDFDNDKIYSIFTSNFFMGYYTIFDN-SSLVLTYQTLTECELIIYKKKDIEYSLSLFPE-NFSFQYTIMRTIAKHGYYKSLLQYRDKKDQLAFVFEMLVKILDIPVEDGVAVLPKSISTTVIKNYCTLSKAFFYSQLKELKEAGIISKVKLQWRINMEALSEKNNSIN
1O3T Chain:A ((2-200))
----PTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD------EEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIK--ITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG-----------
General information:
TITO was launched using:
RESULT:
Template:
1O3T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116435 for 1401 contacts (-83.1/contact) +
2D Compatibility (PS) -20234 + (NN) 2697 + (LL) 1488
1D Compatibility (HY) -3200 + (ID) 1600
Total energy: -137284.0 ( -97.99 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_1O3T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O3T-query.scw
PDB file :
Tito_Scwrl_1O3T.pdb
: