Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNNPKPCEWKSNELSRGYIADYKAFNFVDGEGVRCSLY-VSGCPFHCEGCYNKAAQSFKYGKPYTKELEDDILKDIGHESVQGLTLLGGEPFLNT------ATCLSIVKRIRATYGETKD-IWSWTGYTWDEMMQETADKLE-L--LSLIDVLVDGRFEQKLFDPNLAFRGSSNQRIIDVQKSLAAGEVVLYEL
2QGQ Chain:A ((5-162))
---------------------------------YAYVKISDGC-------------G--SLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIIS--AMLELDKVVKYFDVPVQHGSDK-ILKLMGR--TKSSEELKKMLSSIRER-------
General information:
TITO was launched using:
RESULT:
Template:
2QGQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20131 for 828 contacts (-24.3/contact) +
2D Compatibility (PS) -13191 + (NN) -3704 + (LL) 3472
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -37604.0 ( -45.42 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_2QGQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QGQ-query.scw
PDB file :
Tito_Scwrl_2QGQ.pdb
: