Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEAIERRDDDMTIVSFEVEISAPIQEVFALLTTNTGLAKWFNELEVGELGADGYLLFVMTPEEKITMPIRAFEPNQKLAFEWDQ----------DEVAFELNEITANKTRLTFTEQLTTITEHSPRDISGWHICLKKLQASAEGKIYDFNKTEFKTLFAKYQKELNIEK
2LAK Chain:A ((5-156))
--------MPESFVVRREAHLAAPPAAVFALMTDPEKILRWMGTEAEVEPEPGGLYLVNVTGARFARGSFREVVPVHRLAYSFGWDGSEVVPPGSSLVEIDLIEQG-GGTLLRLTHSGLPSAEQCAGHEEGWAHYLGRLTEVAAGRDPGPDPFYGRRLEHH---------
General information:
TITO was launched using:
RESULT:
Template:
2LAK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25291 for 877 contacts (-28.8/contact) +
2D Compatibility (PS) -14606 + (NN) 4216 + (LL) 1876
1D Compatibility (HY) -4000 + (ID) 1600
Total energy: -39405.0 ( -44.93 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_2LAK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LAK-query.scw
PDB file :
Tito_Scwrl_2LAK.pdb
: