Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTIINAESAFTNATKAENKMWRIKSDPAHVAFLPAS--GVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNADAPLETT-IKGMKTVLLGYDCRMSQQSPA-----YLERIVKDVK----KYKKEDTLVIVNMHWGVEYRETPTDYQT--QFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF |
| 3THO Chain:B ((68-218)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLDYLKRMMRTAPVVVLPGNQDWKGLKLFG-NFVTSI-SSDITFVMSFEPVDVEAKRGQKVRILPFPYPDES----KNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAG-----REIIINRALIPSVVDYAALGHIHSFREIQ----------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3THO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44385 for 784 contacts (-56.6/contact) +
2D Compatibility (PS) -13365 + (NN) -3423 + (LL) 20148
1D Compatibility (HY) -6400 + (ID) 850
Total energy: -48275.0 ( -61.58 by residue)
QMean score : 0.260
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