Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEVHFVGAGPGDKELITLKGYQLLKEADVVIYAGSLVNPELLEYCKASCEIHNSASMNLIEIIDCMEAGVTAGKEVVRLQTGDFSIYGSIREQVEEMKKRSIPFTCTPGVSSFLGAASSFGVEYTVPEVSQSVIITRMAGRTPV-PSRESLRSYAAHQTSMVIFLSVQGIRKVVSELIKGGYKPETPAAVIYKATWAEEKKVTGTLEDIAEKVTEAGITKTALIMVGDFLGEE-FYYSKLYDKDFKHEYR
3NDC Chain:A ((3-236))
HMTVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRTSGRASAMPAGETLENFARTGAVLAIHLSVHVLDEVVQKLVPH-YGEDCPVAIVWRASWPDQRVVRATLATLQTSLG-AELERTALILVGRSLATEDF---------------
General information:
TITO was launched using:
RESULT:
Template:
3NDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163651 for 1860 contacts (-88.0/contact) +
2D Compatibility (PS) -24904 + (NN) -5426 + (LL) 868
1D Compatibility (HY) -22000 + (ID) 4700
Total energy: -219813.0 ( -118.18 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3NDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NDC-query.scw
PDB file :
Tito_Scwrl_3NDC.pdb
: