Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKRQTKFCKESLVIKTSRVFPSDTNNHNTLFGGRLMTYIDDTASISASRHCRTEIVTASTDSVDFLKPIKNDHSVCLESYVASTGRSSMEIFVKIIAENLKT---GERYLAATSFLTFVALGADGKTVEVPLVEPETEEQKRIHAGAEARSIARKIRLKENQSLAESLSTDIPW
1YLI Chain:B ((10-134))
---RQSK----GVLLLRTLAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIAHGRVVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKKVASEPIGERYCVTDAVFTFVAVDNNGRSRTIP-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YLI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62450 for 907 contacts (-68.9/contact) +
2D Compatibility (PS) -12973 + (NN) -662 + (LL) 4308
1D Compatibility (HY) -11200 + (ID) 2000
Total energy: -84977.0 ( -93.69 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_1YLI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YLI-query.scw
PDB file :
Tito_Scwrl_1YLI.pdb
: