Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKRFKKVGIVSAVLVMALSLAACGGGKDTSKSGSSDEKT-LTVSVDAGYK-DYVNKIKGDFEKDNDVKVKVVEKDMFETLEALPLDGPAGTAPDVMMSAFDRIGSLGQQGHLAEVKLGNKDD---YDEKDQKQVTIDDKIYGAPAIIETLVLYYNKDLLDKAPATFKDLETLSKDSRFAFTSEKGKNTGFLAKWTDFYFSYGLLAGYGGYVFGDEGT--NPKDIGLNNKGSVEGITYATKWFQDVWPKGMQDNKSADDFIQDQFVKGKAAAILGGPWSAANYKEA-KINYGVAKIPTLNNGKEYSPFAGGKGWVVSNYSKNKDVAQKWLDYVTNQKNQETLYDMTNEVPANLKARDTAKSKNDELTNAVIEQYKNAQPMPNIPEMSEVWTGAENLMFDAASGSKTPQQSADDAVKVIEDNVTQKYTK |
4HW8 Chain:B ((37-407)) | ----------------------------------KDKPNQLTMWVDGDKQMAFYKKITDQYTKKTGIKVKLVNIGQNDQLENISLDAPAGKGPDIFFLAHDNTGSAYLQGLAAEIKL-SKDELKGFNKQALKAMNYDNKQLALPAIVETTALFYNKKLVKNAPQTLEEVEA----NAAKLTDSKKKQYGMLFDAKNFYFNYPFLFGNDDYIFKKNGSEYDIHQLGLNSKHVVKNAERLQKWYD----KGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKDLGVTTLPT-DGGKPMKPFLGVRGWYLSEYSKHKYWAKDLMLYIT---SKDTLQKYTDEM-SEITGRVDVKSSNPNLK-VFEKQARHAEPMPNIPEMRQVWEPMGNASIFISNG-KNPKQALDEATNDITQNI------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4HW8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -53987 for 3088 contacts (-17.5/contact) +
2D Compatibility (PS) -39129 + (NN) -14681 + (LL) 2648
1D Compatibility (HY) -24400 + (ID) 6550
Total energy: -136099.0 ( -44.07 by residue)
QMean score : 0.439
|
|
|