Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRHFETTRRIVIKVGTSSLVQTSGKINLSKIDHLAFVISSLMNRGMEVILVSSGAMGFGLDILKMDKRPQEISQQQAVSSVGQVAMMSLYSQIFSHYQTHVSQILLTRDVVVFPESLQNVTNSFESLLSMGILPIVNENDAVSVDEMDHKTKFGDNDRLSAVVAKITKADLLIMLSDIDGLFDKNPNIYDDAVLRSHVSEITDDIIKSAGGAGSKFGTGGMLSKIKSAQMVFDNNGQMILMNGANPRDILKVLDGHNIGTYFAQGK
2J5T Chain:D ((7-255))
----------LVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEI----KVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA
General information:
TITO was launched using:
RESULT:
Template:
2J5T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188730 for 2053 contacts (-91.9/contact) +
2D Compatibility (PS) -26798 + (NN) -10722 + (LL) 1040
1D Compatibility (HY) -16400 + (ID) 4450
Total energy: -246060.0 ( -119.85 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_2J5T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J5T-query.scw
PDB file :
Tito_Scwrl_2J5T.pdb
: