Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDKFEWVKLIFATIAVVAILCFTVIGVQTIWTEDVVKDYNRHLTEQVYVDAAVNQNVNLVFYKRGCPYCEVGKKAVINAAGK--NQFPTFYIDVESEDGQDLVKKYQVEKAATIVQIRGGRSKRVTYAVKDRYGHYQPKRQVIKEVFND
1THX Chain:A ((19-94))
-----------------------------------------------------AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPN--PTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHLN-----
General information:
TITO was launched using:
RESULT:
Template:
1THX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40037 for 468 contacts (-85.5/contact) +
2D Compatibility (PS) -8194 + (NN) -2504 + (LL) 5688
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -50247.0 ( -107.37 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_1THX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1THX-query.scw
PDB file :
Tito_Scwrl_1THX.pdb
: