Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKLLRKEVLITLKSQPQAYKSEVDCKLLEAFIKTKAYQNSCVIATYLSFDYEYNTQLLIKQALCDGKRVLVPKT-YPKGKMIFVDY-QK-D--NLRATPFGLLEPVNDRA----VEKASIDLIHVPGLIFNNKGFRIGYGAGYFDRYLSDFEG------DTISTIYRCQRQDFVE-EKHDVAVKEVLCL
3HY3 Chain:A ((8-198))
SAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQICLQVPVN--DMKVDEVLYE
General information:
TITO was launched using:
RESULT:
Template:
3HY3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82139 for 1255 contacts (-65.4/contact) +
2D Compatibility (PS) -18727 + (NN) -6439 + (LL) 108
1D Compatibility (HY) -9600 + (ID) 2450
Total energy: -119247.0 ( -95.02 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_3HY3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HY3-query.scw
PDB file :
Tito_Scwrl_3HY3.pdb
: