Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------MNTNDFDFYLPEEL---IAQTPLEKRDASK----LLVIDHKNKTMTDSHFDHILDELKPGDALVMNNTRVLPARLYGEKPDTHGHIELLLLKNTEGDQWEVLAKPAKRLRVGTKVSFGDGRLIATVTKELEHGGRIVEFSYDGIFLEVLESLGEMPLPPYIHEKLEDRDRYQTVYAKENGSAAAPTAGLHFTKELLEKIETKGVKLVYLTL--------HVGLGTFRPVSVDNLDEHEMH---------------------SEFYQLSKEAADTLNAVKESGGRIVAVGTTSIRTLETIGSKFNGELKADSGWTNIF--IKPGYQFKVVDAFSTNFHLPKSTLVMLVSAFAGRDFV----------LEAYNHAVEE-----RYRFFSFGDAMFVK-- |
| 2YJG Chain:A ((2-426)) | ANIEIPYGKSKLAFDLPDERIQGILRSKMSEEDIVKRALENPIGTKRLQDLAEGKKNIVIITSDHTRPVPSRITLPLLLDEIRKKN----KSANVKILIATGFHRGTTLQEMKAKFGEDLVENEQFVVHDSRNSENMELIGTLPSGGKLEINKLAVEADLLVAEGFIEPHFFAGFSGGRKSILPGIASVQCILANHCSEFIKNPYARTGVLENNPIHRDMIYAAKKANLAFILNVVIDSSHKIVNAFAGHSEKAHLKGCEFVSEIATVNAKPADIVITSNGGYPLDQNIYQSVKGMTAGEAACKDGGVIIIAAECADGHGGEGFYRWFKESKDPQDVMNKILSRGRDETLPDQWEAQILARILINHKVIMVTDSKNYEYVKDMFMTPAKDLGEALKIAESIVNNDSKINVIPDGVSVIVREK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YJG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48250 for 2850 contacts (-16.9/contact) +
2D Compatibility (PS) -35433 + (NN) -2272 + (LL) 720
1D Compatibility (HY) -400 + (ID) 1950
Total energy: -87585.0 ( -30.73 by residue)
QMean score : 0.216
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