Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKLLGQAGFGSRNQVKKLIRSRQVSVDGQIVTKDNVIVDSGLQSIFVGKERV---CLKESSYYLLYKPSGVVSAVRDSEHKTVIDLISEKDRVEGLYPIGRLDRDTEGLLIITNNGPLGYRMLHPKHHVAKTYYVEVNGFLERDAITFFEEGVVFDDGTKCKPAELTIDTANNDKSTARITITEGKFHQVKKMFLAYGVKVIYLRRISFGDLRLDMNLKPGQYRRLRDSEAAILKRYLD
3DH3 Chain:A ((7-236))
VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV-TKKCK---VK-KEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKLIE
General information:
TITO was launched using:
RESULT:
Template:
3DH3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109462 for 1675 contacts (-65.4/contact) +
2D Compatibility (PS) -24480 + (NN) -9248 + (LL) 816
1D Compatibility (HY) -14000 + (ID) 2950
Total energy: -159324.0 ( -95.12 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3DH3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DH3-query.scw
PDB file :
Tito_Scwrl_3DH3.pdb
: