Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHLEIEYKTLLNKDEFNRLTSLFSH--VQPITQTNYYFDTETFEMKAHRMSLRIRTLPNRAELTLKIPREVGNLEHNHDLTLEEAKYIVKNGQFPEDTEIASLILEKGVDPTKLAVFGQLTTTRREMETSIGLMALDSNIYADIKDYELELEVKQPKQGKRDFDQFLKENNINFKYAKSKVARFSATLKNN
2GFG Chain:A ((3-191))
GKEIEIERKTLVSKETFKRLISQLHIGEGDFKLQRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPAGLLETNQTLSKQEAKLALESAHFPS-GEVMDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPTENKIQRFFSKKE--
General information:
TITO was launched using:
RESULT:
Template:
2GFG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27482 for 1398 contacts (-19.7/contact) +
2D Compatibility (PS) -19245 + (NN) 4359 + (LL) -236
1D Compatibility (HY) -8000 + (ID) 3000
Total energy: -53604.0 ( -38.34 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_2GFG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GFG-query.scw
PDB file :
Tito_Scwrl_2GFG.pdb
: