Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSYEKLLERFLTYVKINTRSNPNSTQTPTTQSQVDFALTVLKPEMEAIGLKDVHYLP-------SNGYLVGTLPATSDRLCHKIGFISHMDTADFNAENITPQIVDYKGGDIELGDSGYILSPKDFPNLNNYHGQTLITTDGKTLLGADDKSGIAEIMTAMEYLASHPEIEHCEIRVGFGPDEEIGI-GADKFDVKDFDVDFAYTVDGGP-LGELQYETFSAAGLELTFEGRNVHPGTAKNQMINALQLAMDFHSQLPENERPEQTDGYQGFYHLYDLSGT------VDQAKSSYIIRDFEEVNFLKRKHLAQDIADNMNEALQSERVKVKLYDQYYNMKKVIEKDMTPINIAKEVMEELDIKPIIEPIRGGTDGSKISFMGIPTPNLFAGGENMHGRFEFVSLQTMEKAVDVILGIVAKD |
3RZA Chain:A ((22-390)) | -NEQRLLNTFLELVQIDSETGN----------ESTIQPI-LKEKFIALGLD-VKEDEAAKHPKLGANNLVCTMNSTIE--VPKLYLTSHMDTVV-PAINVKPIVK----------------------------DDGYIYSDGTTILGADDKAGLAAMLEVLQVIKEQQI-PHGQIQFVITVGEESGLIGAKELNSELLDADFGYAIDASADVGTTVVGAPTQMLISAKIIGKTAHAS-TPKEGVSAINIAAKAISRMKLGQV-----DEITTANIGKFHGGSATNIVADEVILEAEARSHDPERIKTQVKHMTDVFETTASELG-GKAEVTVEQSYPGFK--INDNEAVVKIAQESARNLGLSANTIISGGGSDGSIINTFGIPSVILGVGYEKIHTTNERMPIKSLNLLASQVLEIIKIV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RZA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121237 for 3094 contacts (-39.2/contact) +
2D Compatibility (PS) -37863 + (NN) -16581 + (LL) 1500
1D Compatibility (HY) -11200 + (ID) 4200
Total energy: -189581.0 ( -61.27 by residue)
QMean score : 0.484
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