Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTQFLGEFLGTFILVLLGDG-----VVAGNVLSKTKE---------EGTGWTAIVFGWGIACTVAVYVSGLFSPAHLNPAVTLAMASIGAISWGQVIPFIIAQMLGAMVAATILWLHYYPHWKETKDSGLILASFSTGPAIRHTPSNLLGEIIGTAILVITIMAIGPSKVA-AGLGPIIVGIVIFAVGFSLGPTTGYAINPARDLGPRLMHAILPIENKGDSDWSYAWIPVVGPIIGGVLGAILYNIALTLI |
| 3NE2 Chain:E ((8-241)) | --RFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGG----LGATAPFPGIGYGQA-ILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGPYLGDSLM-----GINLWQYFPIYVIGPIVGAVAAAWLYNYLAK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NE2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -160475 for 1945 contacts (-82.5/contact) +
2D Compatibility (PS) -22033 + (NN) -787 + (LL) 860
1D Compatibility (HY) -20800 + (ID) 3850
Total energy: -207085.0 ( -106.47 by residue)
QMean score : 0.268
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