Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGLSVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIR--LRTRQSSLIRANQ-LRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWGPSDNSEYNQLEVFISFLRKKLRFLKADIEIITTKGFGYSLEERT
1YS6 Chain:B ((30-230))
----------------------SGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ-
General information:
TITO was launched using:
RESULT:
Template:
1YS6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82567 for 1552 contacts (-53.2/contact) +
2D Compatibility (PS) -21139 + (NN) -8222 + (LL) 2800
1D Compatibility (HY) -13200 + (ID) 3150
Total energy: -125478.0 ( -80.85 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_1YS6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YS6-query.scw
PDB file :
Tito_Scwrl_1YS6.pdb
: