Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNKKWQWLVYGWKLIILTLLTAAVFSYAMFQGGFVSWFLFYAFLPFVLYAGLLALYPLRSFQASRQMDKTQLHAGDRLGVTVTLRRKLPFPLMYMVIEDCLPEGIESLNRDGAAAKRLVFPWFKRSMTMSYELARVPRGEHHFHSVRVRTGDVLGLIEKTAFFELDDTLFVYPFYQRFSYQVNERHQEDGVSGSSPIHQHHSSVAASVRNYQPGDRFAALDWKTSARRSQLMTKEFEPSRSKNLFLLMDRFSSDAFEEVVSVTASILHSVLKNGAGAGLASIGKEKNIFPIQEGDQHFKHMLRHLAIAHCDAADPISRYAREELGKPSVRQADQVVVTGQLTEDMLHLAEIGGGRVTVILAKEKDAELSQAENVMIERMMKRQIRVRIMRGGRVSRVV
1L9M Chain:A ((595-671))-------------------------------------------------------------TLTLEVL-NEARVRKPVNVQMLFSNPLDEPVRDCVLMVEGSGLLLGN-----LKIDVPTLGPKERSRVRFDILPSRSGTKQLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1L9M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 275 -33333 -121.21 -432.89
target 2D structure prediction score : 0.29
Monomeric hydrophicity matching model chain A : 0.51

3D Compatibility (PKB) : -121.21
2D Compatibility (Sec. Struct. Predict.) : 0.29
1D Compatibility (Hydrophobicity) : 0.51
QMean score : 0.249

(partial model without unconserved sides chains):
PDB file : Tito_1L9M.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1L9M-query.scw
PDB file : Tito_Scwrl_1L9M.pdb: