Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAYDIISDIHGCYDEMTALIQKLGYTIKNGVPVHEEGRVLVFAGDLTDRGPKSIEVIRFVAGAYEKGAVRYVPGNHCNKLYRYLKGNPVKVMHGLETTAAELEELSKDEKKSVSEQFMKLYETAPLYDILHNGELVVAHAGIRADDIGKYTRRVKD---------------FVLYGDVTGETYP------------------------------------DGRPIRRDWAAAY---NGKAWVVYGHTPVKEP-RKVNRTINIDTGCVFGNQLTGFRFPEIETVSVPSSLPYDESRFRPI
2DFJ Chain:A ((2-268))-ATYLIGDVHGCYDELIALLHKVEFT--------PGKDTLWLTGDLVARGPGSLDVLRYVKSLG--DSVRLVLGNHDLHLLAVFAGISR---NKPKDRLTPLLE------APDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGSLTCLRWEDKQYFVQPS------------


General information:
TITO was launched using:
RESULT:

Template: 2DFJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1065 -136764 -128.42 -645.11
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -128.42
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.434

(partial model without unconserved sides chains):
PDB file : Tito_2DFJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2DFJ-query.scw
PDB file : Tito_Scwrl_2DFJ.pdb: