Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTAPTGTSATTTRPWTPRIATQLSVLACAAFIYVTAEILPVGALSAIARNL-RVSVVLVGTLLSWYALVAAVTTVPLVRWTAHWPRRRALVVSLVCLTVSQLVSALAP------------NFAVL---AAGRVLCAVTHGLLW-----AVIAPIATRLVPPSHAGRATTSIYIGTSLALVVGSPLTAAMSLMWGWRLA---AVCVTGAAAAVALAARLALPEMVLRA---DQ-LE--HVGRR---ARHHRNPRLVKVSVLTMIAVTGHFVSYTYIVVIIRDVVGVRGPNLAWLLAAYGVAGLVSVPLVARPLDRWPKGAVIVG----MTGLTAAFTLLTALAFGERHTAATALLGTGAIVLWGALATAVSPMLQSAAMRSGG-DDPDGASGLYVTAFQIGIMAGALLGGLLYERS-LAMMLTASAGLMGVALFGMTVSQHLFENPTLSPGDG |
| 5AYN Chain:A ((11-409)) | -----------------------TQLLLGRLLTRSGDQAWDFVVPFALLVIFPGKLQVAAFYYLIVKIGTFLLTPSSGKWIDTHPRIQVVKWGVWLQFFAILAGMVFFGMLDGLVRAGGRESWLLSVLFIALALSGVMASLGSQITDISVGNDLAPSLVAPEKLTHFNSWLRRIDLATEVGAPILAGALF-------PLAGLFLIGLWNLVSFVPEYFLLRNVIQRSGLKIKVLTEA-----INLRGSFSDPIFWLILSYALLWLSVLSPHGVLLAAYLKDEMRLPETEIGLFRGLGAVFGLISTVSFPYLVRRLGLISSSRWHLGFQGVTLGIAVTAFAMGS-TASV-Y---VFLGCILLSRVGLYGFSNGEFELRQRLIPEGRRGELNSLSSLTTTSATLILFSAGSLLPQTEDFKYLVYVS---------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5AYN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -278232 for 2683 contacts (-103.7/contact) +
2D Compatibility (PS) -36013 + (NN) -13680 + (LL) 3776
1D Compatibility (HY) -6800 + (ID) 1950
Total energy: -332899.0 ( -124.08 by residue)
QMean score : 0.175
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