Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGQPTRAQLAALVDHTLLKPETTRADVAALVAEAAELGVYAVCVSPSMVPVA--VQAGGVRVAAVTGFPSGKHVSSVKAHEAAAALASGASEIDMVIDIGAALCGDIDAVRSDIEAVRAAAAGAVLKVIVESAVLLGQSNAHTLVDACRAAEDAGADFVKTSTGCHPAGGATVRAVELMAETVGPRLGVKASGGIRTAADAVAMLNAGATRLGLSGTRAVLDGLS
3NDO Chain:B ((9-228))
-----TRAQVAALVDHTLLKPEATPSDVTALVDEAADLGVFAVCVSPPLVSVAAGVAPSGLAIAAVAGFPSGKHVPGIKATEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFHPSGGASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGATRLGLSGSRAVLDGF-
General information:
TITO was launched using:
RESULT:
Template:
3NDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163640 for 2004 contacts (-81.7/contact) +
2D Compatibility (PS) -25162 + (NN) -18817 + (LL) 164
1D Compatibility (HY) -22400 + (ID) 7800
Total energy: -237655.0 ( -118.59 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_3NDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NDO-query.scw
PDB file :
Tito_Scwrl_3NDO.pdb
: