Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------------------------------------MVLQELWFGVIAALFLGFFILEGFD--FGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADFGIAAGSWLPALLWGVAFAILVRGLP-----------VDANGHVALSIPDVLNAYTLLGGLATAGL---------------------FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFG----LWTQLAYGKDWT-----WLVL-AVAGCAQAAA------TVLVWRRVSDGWAFMCTLIVVAAVV------VLLFGALYPNLVPSTLNPQWSLTIHNA-------SSTPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP------------------- |
| 4YZF Chain:A ((381-887)) | GLVRDIRRRYPYYLSDITDAFSPQVLAAVIFIYFAALSPAITFGGLLGEKTRNQMGVSELLISTAVQGIL--FALLGAQPLLVVGFSGPLLVFEEAFFSFCETNGLEYIVGRVWIG--FWLILLVVLVVAFEGSFLVRFISRYTQEIFSFLISLIFIYETFSKLIKIFQDHPLQKTYLPNTALLSLVLMAGTFFFAMMLRKFKNSSYFPGKLRRVIGDFGVPISILIMVLVDFFIQDTYTQKLSVPDGFKVVIHPLGLRSEFPIWMMFASALPALLVFILIFLESQITTLIVSKPERKMVKGSGFHLDLLLVVGMGGVAALFGMPWLSATTVRSVTHANALTVMIQEVKEQRISGLLVAVLVGLSILMEPILSRIPLAVLFGIFLYMGVTSLSGIQLFDRILLLFKPPKYHPDVPYVKRVKTWRMHLFTGIQIICLA-VLWVVKS--TPASLALPFVLILTVPLRRVLLPLIFRNVELQCLD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YZF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -241624 for 2543 contacts (-95.0/contact) +
2D Compatibility (PS) -34890 + (NN) -1855 + (LL) 444
1D Compatibility (HY) -23600 + (ID) 3450
Total energy: -304975.0 ( -119.93 by residue)
QMean score : 0.088
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