Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFKSLHQYAHVFSRLSLFGLAFAAAAQAQSQSLTVISFGGATKAAQEQAYFKPFERSGGGQVVAGEYNGEMAKVKAMVDVGKVSWDVVEVESPELLRGCDEGLFERLDPARFGDPAQFVPGTF----------SECGVATYVWSMVMAYDSTKLAR------APQSWADFWNVREFPGKRGL-----RKGAKYTLEVALLADGVKAEDLYKVLATPEGVSRAFAKLDQLKPNIQWWEAGAQPPQWLAAGDVVMSAAYNGRIAAAQK------EGVKLAIVWP--GSLYDPEYWAVVKGTPNKALAEKFIAFASQPQTQKVFSEQIPYGPVHKGTLALLPKTVQE--ALPTAPANLEGARA-VDAEFWVDHGEELEQRFNAWAAR |
| 3TTM Chain:A ((6-345)) | ----------------------------DNKVLHVYNWSDYI----APDTLEKFTKETGIKVVYDVY-DSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWK-NLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPE-NIQKLKQCGVSFLDSPTEILPAALHYLGYKPD-----TDNPKELKAAEELFLKIRPYVTYFH-SSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPD--LPAKTQRAMTRSWTKIKSG |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3TTM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -80135 for 2557 contacts (-31.3/contact) +
2D Compatibility (PS) -33010 + (NN) -11712 + (LL) 4424
1D Compatibility (HY) -15200 + (ID) 2500
Total energy: -138133.0 ( -54.02 by residue)
QMean score : 0.377
|
|
|