Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRRAPMFKPLPITLQRGALRLEPLV-EADIPELVSLAEANREALQYMD-G-PTRP----DWYRQSLAEQREGRALPLAVRL--GVQLVGTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVLRNHRRLAGGRLDDTFVYSITDHEWPQVKAALEASFTG
3PZJ Chain:A ((29-207))
---------APEAAIRGEAVSLQPLDAPRHGAALFRLFAGDDSHWEHLPYGPFEDEDAFITWLALTVA---QSDTALYVVCAKDSDQALGFLGYRQMVQAHGAIEIGHVNFSPALRRTRLATEAVFLLLKTAFE-LGYRRCEWRCDSRNAASAAAARRFGFQFEGTLRQAMVV-KRRNRDTHVFSMLDGEWDA-----------
General information:
TITO was launched using:
RESULT:
Template:
3PZJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82730 for 1262 contacts (-65.6/contact) +
2D Compatibility (PS) -17671 + (NN) -3891 + (LL) 2128
1D Compatibility (HY) -7200 + (ID) 2100
Total energy: -111464.0 ( -88.32 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_3PZJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PZJ-query.scw
PDB file :
Tito_Scwrl_3PZJ.pdb
: