Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALAKRIIPCLDVDNGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRSVQDIRNLLNAGADKVSINTAAVFNPEFVGEAADRFGSQCIVVAIDAKKVSAPGEAPRWEIFTHGGRKPTGLDAVLWAKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISEAVNVPVIASGGVGNLEHLAAGILEGKADAVLAASIFHFGEYTVPEAKAYLASRGIVVR
3ZR4 Chain:C ((2-249))
--LAKRIIACLDVKDGRVVKG---------GDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDG-----EFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLE-AFLAGADAALAASVFHFREIDVRELKEYLKKHGVNVR
General information:
TITO was launched using:
RESULT:
Template:
3ZR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151435 for 2070 contacts (-73.2/contact) +
2D Compatibility (PS) -26267 + (NN) -10826 + (LL) 760
1D Compatibility (HY) -21200 + (ID) 6500
Total energy: -215468.0 ( -104.09 by residue)
QMean score : 0.663
(partial model without unconserved sides chains):
PDB file :
Tito_3ZR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZR4-query.scw
PDB file :
Tito_Scwrl_3ZR4.pdb
: