Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
3QLM Chain:A ((1-124))
----------------------ALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC--
General information:
TITO was launched using:
RESULT:
Template:
3QLM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68609 for 907 contacts (-75.6/contact) +
2D Compatibility (PS) -13293 + (NN) -8712 + (LL) 2308
1D Compatibility (HY) -17200 + (ID) 5050
Total energy: -110556.0 ( -121.89 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_3QLM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QLM-query.scw
PDB file :
Tito_Scwrl_3QLM.pdb
: