Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4M1S Chain:C ((2-168))
MTEYKLVVVGACGVGKSALTIQLIQNHF----------SYRKQVVIDGETSLLDILDTA---------DQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
4M1S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107792 for 1235 contacts (-87.3/contact) +
2D Compatibility (PS) -16575 + (NN) -7759 + (LL) 2924
1D Compatibility (HY) -19200 + (ID) 6950
Total energy: -155352.0 ( -125.79 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_4M1S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M1S-query.scw
PDB file :
Tito_Scwrl_4M1S.pdb
: