Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM
4M1S Chain:C ((2-168))
MTEYKLVVVGACGVGKSALTIQLIQNHF----------SYRKQVVIDGETSLLDILDTA---------DQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
4M1S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109518 for 1235 contacts (-88.7/contact) +
2D Compatibility (PS) -16699 + (NN) -9139 + (LL) 1880
1D Compatibility (HY) -18800 + (ID) 6550
Total energy: -158826.0 ( -128.60 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_4M1S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M1S-query.scw
PDB file :
Tito_Scwrl_4M1S.pdb
: