Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALKSLVVLPLLVLVLLLVRVQPSLGKESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
3DJP Chain:B ((1-124))
--------------------------KESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
General information:
TITO was launched using:
RESULT:
Template:
3DJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22114 for 801 contacts (-27.6/contact) +
2D Compatibility (PS) -13919 + (NN) -12047 + (LL) 3040
1D Compatibility (HY) -14800 + (ID) 6200
Total energy: -66040.0 ( -82.45 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_3DJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJP-query.scw
PDB file :
Tito_Scwrl_3DJP.pdb
: