Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
2XPA Chain:A ((11-167))
------LPPGWEKAMSRSSGRVYYFNHITNASQWERPSG-----------EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
General information:
TITO was launched using:
RESULT:
Template:
2XPA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29158 for 1097 contacts (-26.6/contact) +
2D Compatibility (PS) -15772 + (NN) -10515 + (LL) -200
1D Compatibility (HY) -15600 + (ID) 7250
Total energy: -78495.0 ( -71.55 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_2XPA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XPA-query.scw
PDB file :
Tito_Scwrl_2XPA.pdb
: